| Program name | Description | 
|---|
| abiview | Display the trace in an ABI sequencer file | 
| coderet | Extract CDS, mRNA and translations from feature tables | 
| entret | Retrieve sequence entries from flatfile databases and files | 
| extractalign | Extract regions from a sequence alignment | 
| infoalign | Display basic information about a multiple sequence alignment | 
| infoseq | Display basic information about sequences | 
| refseqget | Get reference sequence | 
| seqxref | Retrieve all database cross-references for a sequence entry | 
| seqxrefget | Retrieve all cross-referenced data for a sequence entry | 
| showalign | Display a multiple sequence alignment in pretty format | 
| variationget | Get sequence variations | 
| whichdb | Search all sequence databases for an entry and retrieve it |