| Program name | Description | 
|---|
| eclique | Largest clique program | 
| edollop | Dollo and polymorphism parsimony algorithm | 
| edolpenny | Penny algorithm Dollo or polymorphism | 
| efactor | Multistate to binary recoding program | 
| emix | Mixed parsimony algorithm | 
| epenny | Penny algorithm, branch-and-bound | 
| fclique | Largest clique program | 
| fdollop | Dollo and polymorphism parsimony algorithm | 
| fdolpenny | Penny algorithm Dollo or polymorphism | 
| ffactor | Multistate to binary recoding program | 
| fmix | Mixed parsimony algorithm | 
| fmove | Interactive mixed method parsimony | 
| fpars | Discrete character parsimony | 
| fpenny | Penny algorithm, branch-and-bound |